blastn 多加上 blastn-short

-task:设置比对模式,通常情况会有一个默认task,这里要设置为blastn-short
-word_size:尽可能小,这里设为7
-evalue:类似于p值的一个指标,越小说明越可靠

 

Tasks

Task

Description

blastp

Traditional BLASTP to compare a protein query to a protein database

blastp-short

BLASTP optimized for queries shorter than 30 residues

blastn

Traditional BLASTN requiring an exact match of 11

blastn-short

BLASTN program optimized for sequences shorter than 50 bases

megablast

Traditional megablast used to find very similar (e.g., intraspecies or closely related species) sequences

dc-megablast

Discontiguous megablast used to find more distant (e.g., interspecies) sequences

 

REF

http://barcwiki.wi.mit.edu/wiki/blastTips

https://web.cas.org/help/BLAST/topics/shrt_seq.htm

https://www.jianshu.com/p/a6ee3d19b832?utm_campaign=maleskine